{ "_id": "6ac8b882de46216d5edd6191", "Package": "kronos", "Title": "Microbiome Oriented Circadian Rhythm Analysis Toolkit", "Version": "1.0.0.9000", "URL": "https://github.com/thomazbastiaanssen/kronos", "Authors@R": "c(person(\"Thomaz\", \"Bastiaanssen\", email = \"thomazbastiaanssen@gmail.com\", role = c(\"aut\", \"cre\")), \nperson(\"Sarah-Jane\", \"Leigh\", email = \"sjleigh@ucc.ie\", role = c(\"aut\")))", "Description": "The goal of 'kronos' is to provide an easy-to-use\nframework to analyse circadian or otherwise rhythmic data using\nthe familiar R linear modelling syntax, while taking care of\nthe trigonometry under the hood.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "Repository": "https://thomazbastiaanssen.r-universe.dev", "Date/Publication": "2023-04-26 15:59:24 UTC", "RemoteUrl": "https://github.com/thomazbastiaanssen/kronos", "RemoteRef": "HEAD", "RemoteSha": "248f7622432e0f522909d9d08945c7c7e313dc15", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-09 09:30:01 UTC", "User": "root" }, "Author": "Thomaz Bastiaanssen [aut, cre],\nSarah-Jane Leigh [aut]", "Maintainer": "Thomaz Bastiaanssen ", "_user": "thomazbastiaanssen", "_type": "src", "_file": "kronos_1.0.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/3d7b0f1b449a0c1ba56da34a984bb65450122c2fb7edd871e6a77233e8a0e9de", "_filesize": 267178, "_sha256": "3d7b0f1b449a0c1ba56da34a984bb65450122c2fb7edd871e6a77233e8a0e9de", "_expires": "2027-01-17T09:48:48.000Z", "_created": "2026-10-09T09:30:01.000Z", "_published": "2026-10-09T09:48:50.553Z", "_buildurl": "https://github.com/r-universe/thomazbastiaanssen/actions/runs/37911244681", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113758126907, "time": 168, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11606524153" }, { "job": 113758126851, "time": 119, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11606901994" }, { "job": 113758126868, "time": 208, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11607438768" }, { "job": 113758127586, "time": 206, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11607841049" }, { "job": 113756961270, "time": 139, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11607480558" }, { "job": 113758126939, "time": 73, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11606893027" }, { "job": 113758126889, "time": 79, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11606677763" }, { "job": 113758126958, "time": 65, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11607191835" }, { "job": 113758126945, "time": 101, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11606399639" } ], "_upstream": "https://github.com/thomazbastiaanssen/kronos", "_commit": { "id": "248f7622432e0f522909d9d08945c7c7e313dc15", "author": "Thomaz Bastiaanssen ", "committer": "Thomaz Bastiaanssen ", "message": "Add NEWS.md\n", "time": 1682524764 }, "_maintainer": { "name": "Thomaz Bastiaanssen", "email": "thomazbastiaanssen@gmail.com", "login": "thomazbastiaanssen", "bluesky": "@biothomaz.bsky.social", "twitter": "@Thomazsan", "description": "", "uuid": 16761973 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" } ], "_owner": "thomazbastiaanssen", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 9, "_contributors": [ { "user": "thomazbastiaanssen", "count": 113, "uuid": 16761973 }, { "user": "sjleigh", "count": 18, "uuid": 119421486 } ], "_userbio": { "uuid": 16761973, "type": "user", "name": "Thomaz", "followers": 34 }, "_downloads": { "count": 233, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/kronos" }, "_devurl": "https://github.com/thomazbastiaanssen/kronos", "_searchresults": 24, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/kronos.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/thomazbastiaanssen/kronos", "_realowner": "thomazbastiaanssen", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2023-04-26" } ], "_exports": [ "fw_kronos", "getKronos", "getKronos_fit", "getKronos_groupwise", "getKronos_input", "getKronos_pairwise", "getKronos_pairwise_p", "getKronos_params", "getKronos_trace", "gg_kronos_acrogram", "gg_kronos_circle", "gg_kronos_sinusoid", "kronos", "kronosListToTable", "show" ], "_datasets": [ { "name": "bigdata", "title": "Snippet of example data to demonstrate the functionality of 'kronos' between and among three different groups", "object": "kronos_demo", "class": [ "data.frame" ], "fields": [ "X49", "X51", "X52", "X24", "X25", "X26", "X27", "X28", "X32", "X36", "X41", "X42", "X43", "X45", "X47", "X48", "X91", "X92", "X93", "X94", "X95", "X96", "X97", "X98", "X54", "X55", "X56", "X57", "X59", "X60", "X61", "X53", "X6", "X7", "X8", "X9", "X10", "X11", "X12", "X13", "X16", "X17", "X18", "X19", "X20", "X101", "X102", "X66", "X67", "X68", "X69", "X70", "X71", "X122", "X123", "X78", "X79", "X80", "X81", "X82", "X83", "X117", "X118", "X72", "X73", "X74", "X75", "X76", "X77", "X84", "X86", "X62", "X63", "X64", "X65", "X87", "X88", "X89", "X90", "X104", "X105", "X106", "X107", "X108", "X119", "X121", "X109", "X110", "X111", "X112", "X113", "X114", "X115", "X116" ], "rows": 112, "table": true, "tojson": true }, { "name": "bigmeta", "title": "Descriptional metadata for the 'bigdata' object, for the purpose of demonstration.", "object": "kronos_demo", "class": [ "data.frame" ], "fields": [ "Animal_ID", "Group", "Timepoint" ], "rows": 94, "table": true, "tojson": true }, { "name": "groupdata", "title": "Snippet of example data to demonstrate the functionality of 'kronos' between and among three different groups", "object": "kronos_demo", "class": [ "data.frame" ], "fields": [ "Animal_ID", "Timepoint", "Treatment", "Variable_1" ], "rows": 94, "table": true, "tojson": true }, { "name": "onevariable", "title": "Snippet of example data to demonstrate the functionality of 'kronos' in the most simple scenario.", "object": "kronos_demo", "class": [ "data.frame" ], "fields": [ "Internal_ID", "Timepoint", "Variable_1" ], "rows": 31, "table": true, "tojson": true }, { "name": "twowaydata", "title": "Snippet of example data to demonstrate the functionality of 'kronos' in the two-factor design scenario.", "object": "kronos_demo", "class": [ "data.frame" ], "fields": [ "Animal.ID", "Factor_A", "Factor_B", "Group", "Timepoint", "Variable_1", "Variable_2", "Variable_3", "Variable_4" ], "rows": 150, "table": true, "tojson": true } ], "_help": [ { "page": "bigdata", "title": "Snippet of example data to demonstrate the functionality of 'kronos' between and among three different groups", "topics": [ "bigdata" ] }, { "page": "bigmeta", "title": "Descriptional metadata for the 'bigdata' object, for the purpose of demonstration.", "topics": [ "bigmeta" ] }, { "page": "build_kronos_formula", "title": "Update 'kronos' formula in light of sine and cosine components", "topics": [ "build_kronos_formula" ] }, { "page": "delistKronos_groupwise", "title": "Get Results from list of KronosOut Objects", "topics": [ "delistKronos_groupwise" ] }, { "page": "delistKronos_pairwise", "title": "Get Results from list of 'KronosOut' Objects", "topics": [ "delistKronos_pairwise" ] }, { "page": "fit_cosinor_model", "title": "Fit cosinor model", "topics": [ "fit_cosinor_model" ] }, { "page": "fit_groupwise_model", "title": "Fit cosinor model", "topics": [ "fit_groupwise_model" ] }, { "page": "fw_kronos", "title": "Fit a cosinor model and extract relevant parameters on a feature table.", "topics": [ "fw_kronos" ] }, { "page": "get_cos_sine", "title": "Get sine and cosine components", "topics": [ "get_cos_sine" ] }, { "page": "get_vars", "title": "Figure out what variable represents time. Called by main 'kronos' function.", "topics": [ "get_vars" ] }, { "page": "getKronos", "title": "Get Results from 'KronosOut' Object", "topics": [ "getKronos" ] }, { "page": "getKronos_fit", "title": "Get Results from 'KronosOut' Object", "topics": [ "getKronos_fit" ] }, { "page": "getKronos_groupwise", "title": "Get Results from 'KronosOut' Object", "topics": [ "getKronos_groupwise" ] }, { "page": "getKronos_input", "title": "Get Results from 'KronosOut' Object", "topics": [ "getKronos_input" ] }, { "page": "getKronos_pairwise", "title": "Get Results from 'KronosOut' Object", "topics": [ "getKronos_pairwise" ] }, { "page": "getKronos_pairwise_p", "title": "Get Results from 'KronosOut' Object", "topics": [ "getKronos_pairwise_p" ] }, { "page": "getKronos_params", "title": "Get Results from 'KronosOut' Object", "topics": [ "getKronos_params" ] }, { "page": "getKronos_trace", "title": "Get Results from 'KronosOut' Object", "topics": [ "getKronos_trace" ] }, { "page": "gg_kronos_acrogram", "title": "A plotting method for acrophase circleplots using 'ggplot2'.", "topics": [ "gg_kronos_acrogram" ] }, { "page": "gg_kronos_circle", "title": "A plotting method for circadian plots using 'ggplot2'.", "topics": [ "gg_kronos_circle" ] }, { "page": "gg_kronos_sinusoid", "title": "A plotting method for circadian plots using 'ggplot2'.", "topics": [ "gg_kronos_sinusoid" ] }, { "page": "groupdata", "title": "Snippet of example data to demonstrate the functionality of 'kronos' between and among three different groups", "topics": [ "groupdata" ] }, { "page": "kronos", "title": "Fit a cosinor model and extract relevant parameters", "topics": [ "kronos" ] }, { "page": "kronos_anova", "title": "Extract p-value from full fit", "topics": [ "kronos_anova" ] }, { "page": "kronos_predict", "title": "Give tracing information for plotting purposes", "topics": [ "kronos_predict" ] }, { "page": "kronosListToTable", "title": "Wrangle results from list of 'KronosOut' Objects to publication ready table.", "topics": [ "kronosListToTable" ] }, { "page": "kronosOut-class", "title": "An S4 class to contain all output parameters and plotting information from the 'kronos' main pipeline", "topics": [ "kronosOut-class" ] }, { "page": "onevariable", "title": "Snippet of example data to demonstrate the functionality of 'kronos' in the most simple scenario.", "topics": [ "onevariable" ] }, { "page": "pairwise_cosinor_model", "title": "Fit pairwise cosinor models as some sort of TukeyHSD.", "topics": [ "pairwise_cosinor_model" ] }, { "page": "show-kronosOut-method", "title": "Show method for 'kronosOut' object.", "topics": [ "show,kronosOut-method" ] }, { "page": "twowaydata", "title": "Snippet of example data to demonstrate the functionality of 'kronos' in the two-factor design scenario.", "topics": [ "twowaydata" ] } ], "_readme": "https://github.com/thomazbastiaanssen/kronos/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "R6", "RColorBrewer", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_score": 4.033423755486949, "_indexed": true, "_nocasepkg": "kronos", "_universes": [ "thomazbastiaanssen" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0.9000", "date": "2026-10-09T09:32:22.000Z", "distro": "resolute", "commit": "248f7622432e0f522909d9d08945c7c7e313dc15", "fileid": "https://r2.ropensci.org/9658d727ca56948a586f77a6103356f9a885eeb76fca006cb972b0c78bdbf58f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/thomazbastiaanssen/actions/runs/37911244681" }, { "r": "4.6.1", "os": "linux", "version": "1.0.0.9000", "date": "2026-10-09T09:31:44.000Z", "distro": "resolute", "commit": "248f7622432e0f522909d9d08945c7c7e313dc15", "fileid": "https://r2.ropensci.org/84f3c811e6d6c31700ab4d8fa8f245e9f6f4226094a726f614ff5efc9bc3d756", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/thomazbastiaanssen/actions/runs/37911244681" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0.9000", "date": "2026-10-09T09:46:38.000Z", "commit": "248f7622432e0f522909d9d08945c7c7e313dc15", "fileid": "https://r2.ropensci.org/e98ced3cd9a6cc664ee4307009c7be69e2425c2eef66b58c92b239e67d3a7aba", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/thomazbastiaanssen/actions/runs/37911244681" }, { "r": "4.6.1", "os": "mac", "version": "1.0.0.9000", "date": "2026-10-09T09:47:09.000Z", "commit": "248f7622432e0f522909d9d08945c7c7e313dc15", "fileid": "https://r2.ropensci.org/363bbe47146313361b8505f0110c855f6fee2d913db7940f90132641c265ab49", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/thomazbastiaanssen/actions/runs/37911244681" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0.9000", "date": "2026-10-09T09:31:31.000Z", "commit": "248f7622432e0f522909d9d08945c7c7e313dc15", "fileid": "https://r2.ropensci.org/0886f08e1ccdae34aa0de77f34169097d0faf5daa8d388ac0b36c8a8bf25c953", "status": "success", "buildurl": "https://github.com/r-universe/thomazbastiaanssen/actions/runs/37911244681" }, { "r": "4.7.0", "os": "win", "version": "1.0.0.9000", "date": "2026-10-09T09:31:05.000Z", "commit": "248f7622432e0f522909d9d08945c7c7e313dc15", "fileid": "https://r2.ropensci.org/5fd79be7b68cbfe5cd632d2c1d0d98983e97826a50b74b526737e6c0d9948282", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/thomazbastiaanssen/actions/runs/37911244681" }, { "r": "4.5.3", "os": "win", "version": "1.0.0.9000", "date": "2026-10-09T09:30:54.000Z", "commit": "248f7622432e0f522909d9d08945c7c7e313dc15", "fileid": "https://r2.ropensci.org/5268ee75a2c4092db15b08e162973c6b7a10f3b0ad1cae0e605e2441f509de3c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/thomazbastiaanssen/actions/runs/37911244681" }, { "r": "4.6.1", "os": "win", "version": "1.0.0.9000", "date": "2026-10-09T09:31:12.000Z", "commit": "248f7622432e0f522909d9d08945c7c7e313dc15", "fileid": "https://r2.ropensci.org/72ccf6734fa11bd822f905d019279bf662e4a105af12bf3b8141e959fa35eb63", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/thomazbastiaanssen/actions/runs/37911244681" } ] }